PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG215000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 545aa    MW: 59090.5 Da    PI: 8.8409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG215000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12336380554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h + ErrRR+r+N++f++Lr llP+       K +Ka++L  ++eY+++L
  Pavir.4NG215000.1.p 336 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 380
                          8899********************95.....599************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-16333401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15335398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10336380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-5346380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGTLEIPRHR AATRIPGCLY ICLWAPVIDG QLIPSSHLRC VDAWIGGGRA REVFDAYRRA  60
FCAAVSGCVP GWAYRDGRAY MELREPDLMA AASLQVQEQL YHEAGTKTAV FMGCERGEIE  120
VGLSDTAAAA AVAGHVQQSL MEELMQLAPA GPSSSSSSMP SLSIGSPEYS SLIRSMAAVA  180
EPSSQERQPP LHPAAVQLPG LLPPVYGPPQ FLGSEAEDAA IAEAMLAVIS SSAPLPPAAS  240
SDAPPWLVLH RAQRWSPRRR AGAFRAYNAA LSPRARPRPG APGQRMAKTA IALMLSVHVA  300
MRDRELAAAR QQEDAAAAQP PPAPPPPQHT SSQLHHMISE RRRRERLNES FQTLRALLPP  360
GSKKDKATVL ANTTEYMHKL IADVSDLEKR NRQLEAQLGL PLETQQAWSG DDSSERVQVD  420
VTAGASTSAA GGQAQVVSIR VTVRAECDLS EVVIAMLAGI KETGRFAVVT VDARQRSNGH  480
AQVGITLRVE VIYMTTHWLR TWAILQRHTL QDKLVAASRF LEQVSMVFFA RAHRWRSSLR  540
IDSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967227.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLK3Y1B70.0K3Y1B7_SETIT; Uncharacterized protein
STRINGSi007981m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-18bHLH family protein